WebbTrajectory analysis. The monocle2 was used and in-house R scripts to conduct pseudotime analysis for hippocampus, heart, liver, and kidney. The recommended analysis protocol was followed, except using FindMarkers function from Seurat package to perform pairwise comparison across different conditions to find the statistically significant up- and down … Webb15 mars 2024 · A) Heatmap showing the enrichment score of the 241 TFs along the pseudotime trajectory. The color bar to the left of the heatmap indicated the Pearson …
Differentiation reveals latent features of aging and an energy …
Webb12 apr. 2024 · In addition, pseudotime trajectory analysis was applied to evaluate the adverse effect of DEHP on PTM development (Fig. 5 H–I and Figs. S7B–D). The PTMs in the DEHP exposure group were spread evenly along the trajectory, while those in the control group were distributed mainly in states 1, 2 and 4. Webb12 apr. 2024 · The cancer cell developmental trajectory of metastasis was described by pseudotime trajectory analysis at different stages, and a cell subcluster with commonality in patients and closely associated with metastasis was discovered. Cell–cell communication analysis revealed the immune escape and pro-mesenchymal growth … in care of passport meaning
Trajectory Analysis with Diffusion Pseudotime - Danh Truong, PhD
Webb30 sep. 2024 · Pseudotime values can be returned back to the seurat object after processing with monocle via AddMetaData: erythroid <- AddMetaData ( object = … Webb6 dec. 2024 · The pseudotime trajectory was then plotted with plot_cell_trajectory, and the change in expression of genes known to be involved in oligodendrocyte development were plotted using plot_genes_in_pseudotime." (C Nagy et al., Nat Neurosci., 2024) I know this is an old version of the monocle. But I want to analyze like this. WebbOne simple approach to ordering cells in pseudotime is to use PCA. By carrying out PCA and labeling the cells by the stage at which they were collected, we can see how well the … inca\\u0027s offers